Transcript: ENSDART00000130680.5 PDZD11-202

Description

PDZ domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-040426-2544]

Gene Synonyms

zgc:77536

Location

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 345 variant alleles and maps to 174 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000075187.4	PDZD11-201	1486	142aa	ENSDARP00000069672.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WG12 Q6NXB2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000130680.5	PDZD11-202	1216	142aa	ENSDARP00000111909.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WG12 Q6NXB2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,216 bps, Translation length: 142 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6NXB2

Version

ENSDART00000130680.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.