Transcript: ENSDART00000172783.2 egf-203

Description

epidermal growth factor [Source:ZFIN;Acc:ZDB-GENE-070922-1]

Location

Chromosome 14: 36,279,875-36,325,558 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 79 domains and features, is associated with 683 variant alleles and maps to 109 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000052739.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000074639.7	egf-201	3654	1114aa	ENSDARP00000069126.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000172783.2	egf-203	3691	1176aa	ENSDARP00000142359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PZ53	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000126178.3	egf-202	3396	1113aa	ENSDARP00000111809.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 3,691 bps, Translation length: 1,176 residues

Version

ENSDART00000172783.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000172783.2 egf-203

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Transcript: ENSDART00000172783.2 egf-203

Summary

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