Transcript: ENSDART00000189514.1 smpd2b-202

Description

sphingomyelin phosphodiesterase 2b [Source:ZFIN;Acc:ZDB-GENE-130530-640]

Location

About this transcript

This transcript has 10 exons, is annotated with 12 domains and features, is associated with 12 variant alleles and maps to 55 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000074602.4	smpd2b-201	4524	436aa	ENSDARP00000069090.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBR1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000189514.1	smpd2b-202	1281	426aa	ENSDARP00000154779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,281 bps, Translation length: 426 residues

Version

ENSDART00000189514.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.