Transcript: ENSDART00000163850.2 APEX1-207

Description

APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]

Location

Chromosome 4: 5,333,988-5,339,829 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 269 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000045843.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000067374.8	APEX1-206	2119	310aa	ENSDARP00000067373.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R9YJQ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180644.1	APEX1-208	2690	310aa	ENSDARP00000156404.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R9YJQ0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000129398.3	APEX1-209	2139	341aa	ENSDARP00000110718.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1PAH1	-
ENSDART00000163850.2	APEX1-207	2136	340aa	ENSDARP00000138791.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWF9	-
ENSDART00000150409.3	APEX1-201	754	220aa	ENSDARP00000125428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000150780.3	APEX1-203	709	189aa	ENSDARP00000125208.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000150620.2	APEX1-202	682	116aa	ENSDARP00000125593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000150306.3	APEX1-205	579	170aa	ENSDARP00000125549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000150493.3	APEX1-204	388	105aa	ENSDARP00000125398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,136 bps, Translation length: 340 residues

Version

ENSDART00000163850.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000163850.2 APEX1-207

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Transcript: ENSDART00000163850.2 APEX1-207

Summary

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