Transcript: ENSDART00000135730.4 lrmp-202

Description

lymphoid-restricted membrane protein [Source:ZFIN;Acc:ZDB-GENE-041210-152]

Location

Chromosome 4: 17,252,596-17,278,928 reverse strand.

About this transcript

This transcript has 37 exons, is annotated with 39 domains and features, is associated with 484 variant alleles and maps to 442 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000045574.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135730.4	lrmp-202	5910	1447aa	ENSDARP00000118448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RHB5-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000178686.2	lrmp-205	4974	1418aa	ENSDARP00000143787.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000131973.2	lrmp-201	1069	217aa	ENSDARP00000116535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000147853.2	lrmp-204	814	271aa	ENSDARP00000121715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000145513.2	lrmp-203	819	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 37, Coding exons: 36, Transcript length: 5,910 bps, Translation length: 1,447 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RHB5

Version

ENSDART00000135730.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000135730.4 lrmp-202

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Transcript: ENSDART00000135730.4 lrmp-202

Summary

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