Transcript: ENSDART00000065562.5 PCF11-202

Description

PCF11 cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]

Gene Synonyms

im:6912257, im:7138745, wu:fc47a05, zgc:175013, zgc:92226

Location

About this transcript

This transcript has 16 exons, is annotated with 41 domains and features, is associated with 226 variant alleles and maps to 236 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000065562.5	PCF11-202	4971	1457aa	ENSDARP00000065561.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186399.1	PCF11-203	1246	83aa	ENSDARP00000153124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000150154.2	PCF11-201	747	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 4,971 bps, Translation length: 1,457 residues

Version

ENSDART00000065562.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.