Transcript: ENSDART00000128313.3 TMEM120B-201

Description

transmembrane protein 120B [Source:ZFIN;Acc:ZDB-GENE-050522-49]

Location

About this transcript

This transcript has 11 exons, is annotated with 22 domains and features, is associated with 770 variant alleles and maps to 153 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000126248.3	TMEM120B-203	1604	337aa	ENSDARP00000106726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LY80	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000063013.7	TMEM120B-204	1680	323aa	ENSDARP00000063012.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G1K2N4	-
ENSDART00000128313.3	TMEM120B-201	1519	316aa	ENSDARP00000107583.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000134705.2	TMEM120B-202	584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,519 bps, Translation length: 316 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000128313.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.