Transcript: ENSDART00000060944.8 mrpl39-201

Description

mitochondrial ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-030131-6520]

Location

Chromosome 1: 532,807-591,328 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 18 domains and features, is associated with 268 variant alleles and maps to 146 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000041570.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000147633.2	mrpl39-204	1261	342aa	ENSDARP00000119574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7T3F9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000060944.8	mrpl39-201	1978	342aa	ENSDARP00000060943.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7T3F9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179731.1	mrpl39-205	949	257aa	ENSDARP00000151560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QAK7	-
ENSDART00000136011.2	mrpl39-202	621	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000143526.2	mrpl39-203	790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 20, Coding exons: 10, Transcript length: 1,978 bps, Translation length: 342 residues

Version

ENSDART00000060944.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000060944.8 mrpl39-201

Summary

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Transcript: ENSDART00000060944.8 mrpl39-201

Summary

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