Transcript: ENSDART00000140087.3 TNFAIP1-203

Description

tumor necrosis factor, alpha-induced protein 1 (endothelial) [Source:ZFIN;Acc:ZDB-GENE-030131-5610]

Location

Chromosome 15: 20,529,268-20,535,518 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 282 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000041565.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000060935.8	TNFAIP1-201	1928	320aa	ENSDARP00000060934.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5K5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186312.1	TNFAIP1-205	994	320aa	ENSDARP00000153764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5K5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140087.3	TNFAIP1-203	873	242aa	ENSDARP00000115718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137926.3	TNFAIP1-202	765	180aa	ENSDARP00000116264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136520.2	TNFAIP1-204	827	103aa	ENSDARP00000124995.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 873 bps, Translation length: 242 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000140087.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140087.3 TNFAIP1-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000140087.3 TNFAIP1-203

Summary

About Us

Get help

Our sister sites

Follow us