Transcript: ENSDART00000060809.6 SMG5-201

Description

SMG5 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-050913-144]

Location

About this transcript

This transcript has 22 exons, is annotated with 32 domains and features, is associated with 823 variant alleles and maps to 179 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000060809.6	SMG5-201	3764	1099aa	ENSDARP00000060808.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R7R1-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 3,764 bps, Translation length: 1,099 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: F1R7R1

Version

ENSDART00000060809.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.