Transcript: ENSDART00000136043.2 si:dkey-51a16.9-202

Description

si:dkey-51a16.9 [Source:ZFIN;Acc:ZDB-GENE-030616-560]

Location

About this transcript

This transcript has 3 exons, is associated with 177 variant alleles and maps to 211 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000141255.3	si:dkey-51a16.9-203	1001	134aa	ENSDARP00000113081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000186284.1	si:dkey-51a16.9-204	3570	132aa	ENSDARP00000146406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RJC6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000128562.3	si:dkey-51a16.9-201	247	82aa	ENSDARP00000107206.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000136043.2	si:dkey-51a16.9-202	807	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 807 bps,

Version

ENSDART00000136043.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.