Transcript: ENSDART00000139547.3 TRAPPC1-203

Description

trafficking protein particle complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040718-242]

Location

About this transcript

This transcript has 6 exons, is associated with 181 variant alleles and maps to 82 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000056935.4	TRAPPC1-202	633	145aa	ENSDARP00000056934.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJL7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139088.3	TRAPPC1-201	622	145aa	ENSDARP00000121929.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJL7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139547.3	TRAPPC1-203	661	39aa	ENSDARP00000115891.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 661 bps, Translation length: 39 residues

Version

ENSDART00000139547.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.