Transcript: ENSDART00000166078.2 SMIM19-202

Description

small integral membrane protein 19 [Source:ZFIN;Acc:ZDB-GENE-050913-125]

Location

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 486 variant alleles and maps to 59 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000054462.8	SMIM19-201	1004	104aa	ENSDARP00000054461.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4V921	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138551.2	SMIM19-203	1480	88aa	ENSDARP00000112993.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCU0	-
ENSDART00000166078.2	SMIM19-202	1351	104aa	ENSDARP00000134603.1	Nonsense mediated decay	Q4V921	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,351 bps, Translation length: 104 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q4V921

Version

ENSDART00000166078.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]