Transcript: ENSDART00000054428.5 zgc:112083-201

Description

zgc:112083 [Source:ZFIN;Acc:ZDB-GENE-050417-284]

Location

Chromosome 15: 19,990,088-20,003,872 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 38 domains and features, is associated with 69 variant alleles and maps to 262 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000037405.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000054428.5	zgc:112083-201	2229	504aa	ENSDARP00000054427.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q567F5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186677.1	zgc:112083-204	1521	504aa	ENSDARP00000149261.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q567F5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000154033.3	zgc:112083-202	846	181aa	ENSDARP00000129268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000155199.2	zgc:112083-203	902	52aa	ENSDARP00000128787.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,229 bps, Translation length: 504 residues

Version

ENSDART00000054428.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000054428.5 zgc:112083-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000054428.5 zgc:112083-201

Summary

About Us

Get help

Our sister sites

Follow us