Transcript: ENSDART00000173517.2 TRMT10A-201

Description

tRNA methyltransferase 10A [Source:ZFIN;Acc:ZDB-GENE-130530-594]

Location

Chromosome 7: 18,710,184-18,712,482 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 314 variant alleles and maps to 54 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000036678.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000175450.2	TRMT10A-205	3769	340aa	ENSDARP00000143482.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000122564.4	TRMT10A-202	1229	340aa	ENSDARP00000109893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBE2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173517.2	TRMT10A-201	775	166aa	ENSDARP00000142879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173905.2	TRMT10A-204	691	216aa	ENSDARP00000142989.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173730.2	TRMT10A-203	1143	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 775 bps, Translation length: 166 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000173517.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000173517.2 TRMT10A-201

Summary

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Transcript: ENSDART00000173517.2 TRMT10A-201

Summary

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