Transcript: ENSDART00000125133.3 MYSM1-201

Description

Myb-like, SWIRM and MPN domains 1 [Source:ZFIN;Acc:ZDB-GENE-041014-28]

Location

About this transcript

This transcript has 20 exons, is annotated with 28 domains and features, is associated with 836 variant alleles and maps to 199 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125133.3	MYSM1-201	3666	822aa	ENSDARP00000107103.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RGA4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000188495.1	MYSM1-202	6758	828aa	ENSDARP00000148580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9P2N0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 3,666 bps, Translation length: 822 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RGA4

Version

ENSDART00000125133.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.