Transcript: ENSDART00000043452.8 tsnaxip1-201

Description

translin-associated factor X interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-39]

Location

About this transcript

This transcript has 17 exons, is annotated with 13 domains and features, is associated with 496 variant alleles and maps to 194 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000043452.8	tsnaxip1-201	2605	673aa	ENSDARP00000043451.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WVR3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135546.2	tsnaxip1-202	842	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000148104.2	tsnaxip1-203	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,605 bps, Translation length: 673 residues

Version

ENSDART00000043452.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.