Transcript: ENSDART00000129400.4 ALCAM-201

Description

activated leukocyte cell adhesion molecule a [Source:ZFIN;Acc:ZDB-GENE-990415-30]

Location

Chromosome 10: 28,731,749-28,761,454 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 31 domains and features, is associated with 916 variant alleles and maps to 396 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000026531.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000192220.1	ALCAM-203	2058	564aa	ENSDARP00000152888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000129400.4	ALCAM-201	3112	545aa	ENSDARP00000109779.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000188436.1	ALCAM-202	1902	555aa	ENSDARP00000144664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PV55	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 3,112 bps, Translation length: 545 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000129400.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000129400.4 ALCAM-201

Summary

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Transcript: ENSDART00000129400.4 ALCAM-201

Summary

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