Transcript: ENSDART00000034638.5 CCDC28A-201

Description

coiled-coil domain containing 28A [Source:ZFIN;Acc:ZDB-GENE-030131-5007]

Location

Chromosome 17: 33,409,038-33,414,828 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 413 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000022983.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000034638.5	CCDC28A-201	1279	180aa	ENSDARP00000028520.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142203.3	CCDC28A-204	735	181aa	ENSDARP00000122827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000135218.3	CCDC28A-202	731	180aa	ENSDARP00000120116.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140149.2	CCDC28A-205	724	184aa	ENSDARP00000113435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000131807.2	CCDC28A-203	823	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,279 bps, Translation length: 180 residues

Version

ENSDART00000034638.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000034638.5 CCDC28A-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000034638.5 CCDC28A-201

Summary

About Us

Get help

Our sister sites

Follow us