Transcript: ENSDART00000135399.2 phf11-202

Description

PHD finger protein 11 [Source:ZFIN;Acc:ZDB-GENE-081104-417]

Location

About this transcript

This transcript has 11 exons, is associated with 75 variant alleles and maps to 55 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000033902.9	phf11-201	1914	531aa	ENSDARP00000031289.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8N7URD4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000143493.3	phf11-203	936	306aa	ENSDARP00000119825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147481.3	phf11-204	1971	207aa	ENSDARP00000112678.1	Nonsense mediated decay	-	-
ENSDART00000135399.2	phf11-202	789	83aa	ENSDARP00000117639.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 3, Transcript length: 789 bps, Translation length: 83 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000135399.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.