Transcript: ENSDART00000133866.2 PTPRZ1-204

Description

protein tyrosine phosphatase receptor type Z1b [Source:ZFIN;Acc:ZDB-GENE-050506-100]

Location

Chromosome 4: 4,902,392-4,911,301 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 321 variant alleles and maps to 23 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000020871.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000175651.2	PTPRZ1-205	3912	1303aa	ENSDARP00000143302.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000130818.4	PTPRZ1-202	4365	1298aa	ENSDARP00000112211.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A5J4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000127751.3	PTPRZ1-203	1535	496aa	ENSDARP00000110913.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133866.2	PTPRZ1-204	704	235aa	ENSDARP00000123007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000150309.2	PTPRZ1-201	599	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 704 bps, Translation length: 235 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000133866.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000133866.2 PTPRZ1-204

Summary

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Transcript: ENSDART00000133866.2 PTPRZ1-204

Summary

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