Transcript: ENSDART00000122645.3 SGTA-201

Description

small glutamine rich tetratricopeptide repeat co-chaperone alpha [Source:ZFIN;Acc:ZDB-GENE-030131-8811]

Location

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 167 variant alleles and maps to 66 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000004920.8	SGTA-203	1599	320aa	ENSDARP00000027982.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NXA1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179670.1	SGTA-202	974	320aa	ENSDARP00000150575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NXA1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000122645.3	SGTA-201	618	165aa	ENSDARP00000106380.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 618 bps, Translation length: 165 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000122645.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]