Transcript: ENSDART00000140811.3 SNX12-204

Description

sorting nexin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-787]

Location

Chromosome 21: 30,470,959-30,487,039 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 511 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000019060.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000003335.10	SNX12-205	1865	162aa	ENSDARP00000008027.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803J1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000171648.2	SNX12-206	4762	273aa	ENSDARP00000134144.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000140811.3	SNX12-204	3414	283aa	ENSDARP00000112873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000133478.3	SNX12-202	2207	160aa	ENSDARP00000122910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TNQ4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000147375.2	SNX12-201	2135	151aa	ENSDARP00000114138.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NYP1	-
ENSDART00000126678.4	SNX12-203	1849	153aa	ENSDARP00000106488.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2RV07	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 3,414 bps, Translation length: 283 residues

Version

ENSDART00000140811.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140811.3 SNX12-204

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Transcript: ENSDART00000140811.3 SNX12-204

Summary

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