Transcript: ENSDART00000141760.2 SLCO1C1-203

Description

solute carrier organic anion transporter family, member 1C1 [Source:ZFIN;Acc:ZDB-GENE-041210-50]

Location

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 857 variant alleles and maps to 87 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000039083.9	SLCO1C1-205	2480	710aa	ENSDARP00000039385.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DJD4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134442.3	SLCO1C1-201	2719	689aa	ENSDARP00000116999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RIX3	-
ENSDART00000184693.1	SLCO1C1-204	2070	689aa	ENSDARP00000147503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RIX3	-
ENSDART00000141760.2	SLCO1C1-203	544	90aa	ENSDARP00000115870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148016.2	SLCO1C1-202	522	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 544 bps, Translation length: 90 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000141760.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.