Transcript: ENSDART00000041211.5 ccdc170-201

Description

coiled-coil domain containing 170 [Source:ZFIN;Acc:ZDB-GENE-070112-162]

Location

Chromosome 17: 7,821,918-7,827,633 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 278 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000016161.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000041211.5	ccdc170-201	1313	252aa	ENSDARP00000041210.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000157184.3	ccdc170-203	2505	693aa	ENSDARP00000129402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F1G2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000156771.2	ccdc170-202	875	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 1,313 bps, Translation length: 252 residues

Version

ENSDART00000041211.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000041211.5 ccdc170-201

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Transcript: ENSDART00000041211.5 ccdc170-201

Summary

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