Transcript: ENSDART00000134373.2 lhx1a-202

Description

LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]

Location

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 105 variant alleles and maps to 42 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000005641.6	lhx1a-201	2402	405aa	ENSDARP00000021069.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DGH2 Q90476	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134373.2	lhx1a-202	433	97aa	ENSDARP00000120823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 433 bps, Translation length: 97 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000134373.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.