Transcript: ENSDART00000034242.9 PICALM-202

Description

phosphatidylinositol binding clathrin assembly protein a [Source:ZFIN;Acc:ZDB-GENE-040426-761]

Location

Chromosome 10: 29,138,063-29,206,194 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 15 domains and features, is associated with 1473 variant alleles and maps to 77 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000012866.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000025227.11	PICALM-201	3477	589aa	ENSDARP00000021165.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKW9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000178280.2	PICALM-206	2534	600aa	ENSDARP00000144639.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000034242.9	PICALM-202	2222	547aa	ENSDARP00000032600.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000123033.3	PICALM-205	2220	497aa	ENSDARP00000111719.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000148503.2	PICALM-204	825	152aa	ENSDARP00000124208.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000148828.3	PICALM-203	566	189aa	ENSDARP00000125039.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 2,222 bps, Translation length: 547 residues

Version

ENSDART00000034242.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000034242.9 PICALM-202

Summary

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Transcript: ENSDART00000034242.9 PICALM-202

Summary

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