Transcript: ENSDART00000151424.2 eif4bb-205

Description

eukaryotic translation initiation factor 4Bb [Source:NCBI gene (formerly Entrezgene);Acc:336619]

Location

Chromosome 6: 39,064,825-39,068,492 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 275 variant alleles and maps to 100 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000010194.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000021520.10	eif4bb-201	2014	569aa	ENSDARP00000008894.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000128308.4	eif4bb-204	2274	632aa	ENSDARP00000105821.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8G3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000127365.3	eif4bb-202	788	128aa	ENSDARP00000105773.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151424.2	eif4bb-205	538	32aa	ENSDARP00000125868.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000128034.3	eif4bb-203	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 538 bps, Translation length: 32 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000151424.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000151424.2 eif4bb-205

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000151424.2 eif4bb-205

Summary

About Us

Get help

Our sister sites

Follow us