Transcript: ENSDART00000162681.2 RBFOX3-201

Description

RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1]

Location

About this transcript

This transcript has 11 exons, is annotated with 18 domains and features, is associated with 439 variant alleles and maps to 172 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000175712.2	RBFOX3-202	1589	373aa	ENSDARP00000144068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162681.2	RBFOX3-201	7208	326aa	ENSDARP00000138305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000153146.3	RBFOX3-203	1104	367aa	ENSDARP00000127143.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 7,208 bps, Translation length: 326 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000162681.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

RNA-Seq supported partial