Transcript: ENSDART00000157265.2 TRIM13-202

Description

tripartite motif containing 13 [Source:ZFIN;Acc:ZDB-GENE-050522-516]

Location

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 186 variant alleles and maps to 249 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000023210.10	TRIM13-201	2775	414aa	ENSDARP00000013495.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H9KUW1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000175160.2	TRIM13-203	1493	414aa	ENSDARP00000143359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H9KUW1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000157265.2	TRIM13-202	2077	414aa	ENSDARP00000129064.1	Nonsense mediated decay	H9KUW1	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 2,077 bps, Translation length: 414 residues

Version

ENSDART00000157265.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.