Transcript: ENSDART00000063716.7 nphp1-201

Description

nephronophthisis 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1234]

Gene Synonyms

im:7162391, wu:fi59g07, zgc:152930

Location

About this transcript

This transcript has 20 exons, is annotated with 17 domains and features, is associated with 844 variant alleles and maps to 268 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000063716.7	nphp1-201	2240	667aa	ENSDARP00000063715.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000141684.2	nphp1-202	962	226aa	ENSDARP00000112995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 2,240 bps, Translation length: 667 residues

Version

ENSDART00000063716.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.