Transcript: ENSDART00000126860.4 rtn1a-204

Description

reticulon 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2426]

Location

About this transcript

This transcript has 7 exons, is associated with 339 variant alleles and maps to 201 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000076574.6	rtn1a-203	3505	818aa	ENSDARP00000071046.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4G5V7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000193268.1	rtn1a-205	2066	353aa	ENSDARP00000146514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000076571.7	rtn1a-202	1797	203aa	ENSDARP00000071042.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PBQ4	-
ENSDART00000057441.5	rtn1a-201	1529	191aa	ENSDARP00000057440.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8T8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000126860.4	rtn1a-204	1579	59aa	ENSDARP00000124411.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 1,579 bps, Translation length: 59 residues

Version

ENSDART00000126860.4

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.