Transcript: ENSDART00000138602.2 STXBP5L-201

Description

syntaxin binding protein 5L [Source:ZFIN;Acc:ZDB-GENE-041210-220]

Location

Chromosome 9: 27,430,135-27,442,339 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 14 domains and features, is associated with 482 variant alleles and maps to 127 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000006383.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000017292.10	STXBP5L-202	3908	1159aa	ENSDARP00000027152.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5SQE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000181270.1	STXBP5L-203	4269	1181aa	ENSDARP00000153693.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QFD7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000187112.1	STXBP5L-204	4200	1158aa	ENSDARP00000147177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q0L1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000138602.2	STXBP5L-201	643	214aa	ENSDARP00000117512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 643 bps, Translation length: 214 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000138602.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138602.2 STXBP5L-201

Summary

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Transcript: ENSDART00000138602.2 STXBP5L-201

Summary

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