Transcript: ENSDART00000152736.3 smyd2b-203

Description

SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]

Location

Chromosome 20: 572,156-584,010 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 13 domains and features, is associated with 421 variant alleles and maps to 101 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000005629.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000028062.10	smyd2b-201	1553	437aa	ENSDARP00000005268.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	T1ECS2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000162198.2	smyd2b-204	5568	434aa	ENSDARP00000133013.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RGL7-1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000031759.6	smyd2b-202	2812	423aa	ENSDARP00000036459.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000152736.3	smyd2b-203	760	249aa	ENSDARP00000127036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 760 bps, Translation length: 249 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000152736.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000152736.3 smyd2b-203

Summary

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Transcript: ENSDART00000152736.3 smyd2b-203

Summary

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