Transcript: ENSDART00000008096.8 APH1B-202

Description

APH1B gamma secretase subunit [Source:ZFIN;Acc:ZDB-GENE-031118-31]

Gene Synonyms

APH1A, psfl, wu:fc41h05, wu:fi53a04

Location

About this transcript

This transcript has 6 exons, is annotated with 26 domains and features, is associated with 78 variant alleles and maps to 176 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000008096.8	APH1B-202	1974	258aa	ENSDARP00000011743.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JHE9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146655.3	APH1B-201	728	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000145129.2	APH1B-203	500	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,974 bps, Translation length: 258 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8JHE9

Version

ENSDART00000008096.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.