Transcript: ENSDART00000163581.2 spata6l-204

Description

spermatogenesis associated 6-like [Source:ZFIN;Acc:ZDB-GENE-040426-1369]

Location

Chromosome 7: 69,478,914-69,486,672 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 273 variant alleles and maps to 22 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000004874.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000008421.6	spata6l-201	1347	338aa	ENSDARP00000014739.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000161061.2	spata6l-203	865	220aa	ENSDARP00000141490.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000163581.2	spata6l-204	761	116aa	ENSDARP00000135889.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000167046.2	spata6l-206	931	36aa	ENSDARP00000132466.1	Nonsense mediated decay	-
ENSDART00000169563.2	spata6l-208	838	69aa	ENSDARP00000133638.1	Nonsense mediated decay	-
ENSDART00000157585.2	spata6l-202	772	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000167136.2	spata6l-207	772	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000166055.2	spata6l-205	733	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 761 bps, Translation length: 116 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000163581.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000163581.2 spata6l-204

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Transcript: ENSDART00000163581.2 spata6l-204

Summary

About Us

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