Transcript: ENSDART00000110005.4 CDHR1-201

Description

cadherin-related family member 1a [Source:ZFIN;Acc:ZDB-GENE-040924-4]

Location

About this transcript

This transcript has 18 exons, is annotated with 59 domains and features, is associated with 374 variant alleles and maps to 153 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110005.4	CDHR1-201	3862	857aa	ENSDARP00000101442.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6B3P0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000026679.8	CDHR1-202	4844	855aa	ENSDARP00000026292.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G1K2I7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,862 bps, Translation length: 857 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6B3P0

Version

ENSDART00000110005.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

dotter confirmed [Definitions]