Transcript: ENSDART00000156260.3 TMEM63C-201

Description

transmembrane protein 63C [Source:ZFIN;Acc:ZDB-GENE-120928-2]

Location

Chromosome 17: 44,780,166-44,923,661 forward strand.

About this transcript

This transcript has 23 exons, is annotated with 42 domains and features, is associated with 3584 variant alleles and maps to 192 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000004158.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000156260.3	TMEM63C-201	4025	825aa	ENSDARP00000128675.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WEM4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000074802.5	TMEM63C-204	2391	796aa	ENSDARP00000069288.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000155096.2	TMEM63C-202	704	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000154711.2	TMEM63C-203	389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 23, Coding exons: 22, Transcript length: 4,025 bps, Translation length: 825 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: X1WEM4

Version

ENSDART00000156260.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000156260.3 TMEM63C-201

Summary

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Transcript: ENSDART00000156260.3 TMEM63C-201

Summary

About Us

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