Transcript: ENSDART00000021372.6 CHRNA5-201

Description

cholinergic receptor, nicotinic, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-050417-440]

Location

About this transcript

This transcript has 9 exons, is annotated with 45 domains and features, is associated with 495 variant alleles and maps to 158 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000021372.6	CHRNA5-201	1752	466aa	ENSDARP00000002331.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q567Y7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000185249.1	CHRNA5-202	1440	466aa	ENSDARP00000148565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q567Y7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,752 bps, Translation length: 466 residues

Version

ENSDART00000021372.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.