Transcript: ENSDART00000104476.3 SNX9-202

Description

sorting nexin 9a [Source:ZFIN;Acc:ZDB-GENE-030616-66]

Location

About this transcript

This transcript has 18 exons, is annotated with 20 domains and features, is associated with 1238 variant alleles and maps to 193 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000104476.3	SNX9-202	2903	562aa	ENSDARP00000095249.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZZB1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142672.2	SNX9-201	793	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000098593.5	SNX9-203	847	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 2,903 bps, Translation length: 562 residues

Version

ENSDART00000104476.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.