Transcript: ENSDART00000165145.2 litaf-202

Description

lipopolysaccharide-induced TNF factor [Source:ZFIN;Acc:ZDB-GENE-040704-23]

Location

About this transcript

This transcript has 2 exons, is annotated with 5 domains and features, is associated with 215 variant alleles and maps to 92 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000157619.2	litaf-201	2247	163aa	ENSDARP00000130720.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6GMG8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000166197.2	litaf-203	787	128aa	ENSDARP00000137959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000165145.2	litaf-202	304	75aa	ENSDARP00000130545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 304 bps, Translation length: 75 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000165145.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.