Transcript: ENSDART00000142745.3 slka-204

Description

STE20-like kinase a [Source:ZFIN;Acc:ZDB-GENE-050411-66]

Location

Chromosome 13: 24,781,188-24,825,691 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 43 domains and features, is associated with 746 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000061525.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142745.3	slka-204	4982	1201aa	ENSDARP00000113992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZD09	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000087786.6	slka-201	4615	1232aa	ENSDARP00000082219.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5H3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000186951.1	slka-205	4372	1151aa	ENSDARP00000155211.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000136177.2	slka-203	362	121aa	ENSDARP00000115744.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000135796.2	slka-202	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 4,982 bps, Translation length: 1,201 residues

Version

ENSDART00000142745.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000142745.3 slka-204

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Transcript: ENSDART00000142745.3 slka-204

Summary

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