Transcript: ENSDART00000122491.3 mcph1-201

Description

microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]

Location

About this transcript

This transcript has 9 exons, is associated with 199 variant alleles and maps to 73 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148907.3	mcph1-202	1653	463aa	ENSDARP00000125093.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W5H6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149619.2	mcph1-204	731	244aa	ENSDARP00000124269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149139.2	mcph1-203	480	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000122491.3	mcph1-201	1608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 1,608 bps,

Version

ENSDART00000122491.3

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.