Transcript: ENSDART00000109899.4 slc35c2-202

Description

solute carrier family 35 member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]

Location

Chromosome 23: 20,431,548-20,444,013 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 16 domains and features, is associated with 526 variant alleles and maps to 186 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000037517.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109899.4	slc35c2-202	2298	362aa	ENSDARP00000104003.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R7R7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000132920.3	slc35c2-203	7430	1897aa	ENSDARP00000113029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000102963.5	slc35c2-201	7336	1816aa	ENSDARP00000093738.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000193950.1	slc35c2-206	5553	362aa	ENSDARP00000157391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R7R7	-
ENSDART00000140219.2	slc35c2-205	838	187aa	ENSDARP00000120995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137294.2	slc35c2-204	714	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,298 bps, Translation length: 362 residues

Version

ENSDART00000109899.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000109899.4 slc35c2-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000109899.4 slc35c2-202

Summary

About Us

Get help

Our sister sites

Follow us