Transcript: ENSDART00000147567.2 smpd4-207

Description

sphingomyelin phosphodiesterase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2672]

Location

Chromosome 21: 18,910,502-18,922,969 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 5 domains and features, is associated with 463 variant alleles and maps to 135 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000020730.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000130519.4	smpd4-202	3439	791aa	ENSDARP00000107263.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000190175.1	smpd4-209	3635	791aa	ENSDARP00000146929.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000160185.3	smpd4-208	3398	821aa	ENSDARP00000137006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000017937.7	smpd4-201	3386	791aa	ENSDARP00000022632.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000191546.1	smpd4-210	3386	791aa	ENSDARP00000157312.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000147567.2	smpd4-207	1362	454aa	ENSDARP00000122303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000137143.2	smpd4-204	596	87aa	ENSDARP00000112609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000141659.2	smpd4-205	638	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000133396.2	smpd4-203	806	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
ENSDART00000144131.3	smpd4-206	738	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,362 bps, Translation length: 454 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000147567.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000147567.2 smpd4-207

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Transcript: ENSDART00000147567.2 smpd4-207

Summary

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