Transcript: ENSDART00000132379.2 limch1a-201

Description

LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]

Location

About this transcript

This transcript has 22 exons, is annotated with 50 domains and features, is associated with 1672 variant alleles and maps to 117 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000132379.2	limch1a-201	3454	1019aa	ENSDARP00000120339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A4X7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000137940.2	limch1a-202	931	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

ID History

Stable ID

ENSDARP00000120339.1

Status

Current

Latest Version

Release: 114 (current)

Assembly: GRCz11

Database: danio_rerio_core_114_11

Release	Gene	Transcript	Protein
91	ENSDARG00000074275	ENSDART00000132379.1	ENSDARP00000120339 MASSGDDSASNAQLDQPAEATPESAFQEAQKWIEAVTGRSFGDKDFRSGLENGILLCELL SSIKPGLVKKINRLPTPIAGLDNLTMFLRGCEEVGLKGSQLFDPGDLQDTSIRANLTGSD CSRKLKNVLITIYWLGKAANSCATYNGPTLDLKEFEGLLSMMRKECVNDESDSPKRSIRD SGYIDSWESERSDSLSPPRHGRDDSFDSLDSFGSRSQNTPSPDTVIRCNSDDSEADRKLP DVRKDDMSARRVSYKEPRAALPFNQYLPNKSNQTNYLPAPLRKRRSDREEDRRSVSNSTS PVGGERPLRSVSLIDMRDEEDELAYLRPHSQSRHEHLHNQYNKVKEEEDQWQDDLARWKN RRRSASQDLIKKEEERKMMEKLMTTDGGHGHRKKSIKTYKEIVEEKEKREQELHEQYCKA SSPEEKAAVLQRYALRFTISDAILEKLQLPKLPSAASPMHTSPLHQPEQKTTSTTLVEAE VPELSQTTQTQQTVHVKQKITHDEAPAQPKIPKPTPPPKCIKAPEVLSAPSRVPPAPSKP VPLITPKPYSQPKFSQGFRKSLKSDGLIRVNGDHNQQVIREKANRDPLQSPEVNFSSSPP KPEIQSQQNEDPIVLETTDHQQDLQTPKPDLEKEVIKKEEESLLSPQKEISKEDTSTTLS VSEPAGKQPVPDTVMKRNFVVTTTIVTELTQTHPVPLEDTSSTEQIETPMLNLAKRVDHW TWDPNEERRRQERWQQEQERLLQEKYQREQEKLKEEWEKAQREVEEEERRHHEEERRILE ETVTPLTPRTSALSSSCGTEAPSLTQPSAPHETIVLSLADWERKQEMLEKQAQTGQSNGL THSPDPVIAAAQQNGQRAEAQESQITATPQLQFIQDGSWSCKSKGRQEDLKKTASLDRKQ SPAPSQTTGMRRTGSCENVLGTHPSKSPTPSQDTPPPSPSRSVSGKKLCSSCAHPLGKGA AMIIETLGLYFHIQCFKCGVCKGLLGDTSAGTDVRIRNGLLNCHECYIKSRAAGQPTTL