Summary

Assembly: Zv9, Apr 2010
Database version: 75.9
Base Pairs: 1,505,581,940
Golden Path Length: 1,412,464,843
Genebuild by: Ensembl
Genebuild method: Mixed strategy build
Genebuild started: Jun 2010
Genebuild released: Nov 2010
Genebuild last updated/patched: Feb 2014

Gene counts

Coding genes

Genes and/or transcript that contains an open reading frame (ORF).

:
26,459 (incl. 32 readthrough)
Short non coding genes

Short non coding genes are usually fewer than 200 bases long. They may be transcribed but are not translated. In Ensembl, genes with the following biotypes are classed as short non coding genes: miRNA, miscRNA, rRNA, tRNA, ncRNA, scRNA, snlRNA, snoRNA, snRNA, tRNA, and also the pseudogenic form of these biotypes. The majority of the short non coding genes in Ensembl are annotated automatically by our ncRNA pipeline.

:
4,431
Long non coding genes

Long non coding genes are usually greater than 200 bases long. They may be transcribed but are not translated. In Ensembl, genes with the following biotypes are classed as long non coding genes: 3prime_overlapping_ncrna, ambiguous_orf, antisense, antisense_RNA, lincRNA, ncrna_host, non_coding, non_stop_decay, processed_transcript, retained_intron, sense_intronic, sense_overlapping. The majority of the long non coding genes in Ensembl are annotated manually by HAVANA.

:
2,583 (incl. 5 readthrough)
Pseudogenes

A pseudogene shares an evolutionary history with a functional protein-coding gene but it has been mutated through evolution to contain frameshift and/or stop codon(s) that disrupt the open reading frame.

:
264
Gene transcriptsNucleotide sequence resulting from the transcription of the genomic DNA to mRNA. One gene can have different transcripts or splice variants resulting from the alternative splicing of different exons in genes.: 56,754

Other

Genscan gene predictions: 36,628
Structural variants: 34,571
Short Variants: 1,454,332