Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RNF111 ENSDARG00000078802

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Description

ring finger protein 111 [Source:ZFIN;Acc:ZDB-GENE-070808-2]

Location

Chromosome 7: 30,561,588-30,624,435 reverse strand.

GRCz11:CM002891.2

About this gene

This gene has 5 transcripts (splice variants), 208 orthologues, 3 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173789.2	RNF111-203	3231	1032aa	ENSDARP00000142775.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4KWC4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000173828.2	RNF111-201	5054	1003aa	ENSDARP00000142644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	N0A274	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000111626.4	RNF111-204	3147	1004aa	ENSDARP00000101817.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QWE1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000166046.2	RNF111-205	3144	1003aa	ENSDARP00000137956.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	N0A274	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000173775.2	RNF111-202	3119	995aa	ENSDARP00000142752.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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