Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPOP ENSDARG00000100519

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Description

speckle type BTB/POZ protein [Source:ZFIN;Acc:ZDB-GENE-040426-1378]

Location

Chromosome 3: 20,658,203-20,793,656 reverse strand.

GRCz11:CM002887.2

About this gene

This gene has 4 transcripts (splice variants), 260 orthologues, 17 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000163473.2	SPOP-201	2448	374aa	ENSDARP00000130146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7YYH8 Q7T330	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000159457.2	SPOP-204	2394	374aa	ENSDARP00000135804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7YYH8 Q7T330	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000193532.1	SPOP-203	2222	374aa	ENSDARP00000152225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7YYH8 Q7T330	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170650.2	SPOP-202	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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