Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: usp42 ENSDARG00000077300

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Description

ubiquitin specific peptidase 42 [Source:ZFIN;Acc:ZDB-GENE-030131-5739]

Location

Chromosome 12: 17,570,675-17,593,030 reverse strand.

GRCz11:CM002896.2

About this gene

This gene has 2 transcripts (splice variants), 233 orthologues, 41 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000168758.2	usp42-202	4483	1168aa	ENSDARP00000130865.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QY38	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134597.4	usp42-201	4246	1168aa	ENSDARP00000117687.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QY38	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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